BIGpopA

R package
Pedigree
Parentage
Population structure
Polyploid
Pedigree quality control, parentage assignment, and breed or line composition estimation.

BIGpopA is an R package for pedigree quality control, parentage assignment from SNP data, and genomic breed or line composition estimation in diploid and polyploid populations.

R packageParentagePopulation analysis

Start here

remotes::install_github("Breeding-Insight/BIGpopA", dependencies = TRUE)
library(BIGpopA)

Source code Releases

Good fit for

  • Detecting pedigree errors with SNP genotype data
  • Assigning parentage from candidate parents
  • Estimating breed or line composition in diploids and polyploids
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