Breeding Insight Software
Software and training for breeding programs
Browse open-source tools for breeding data and genomics, then find the tutorials and workshop materials that support your work.
Find what you need
Choose a tool, follow a practical workflow, or return to material from a training event.
Browse software
Compare packages and applications by task, data type, language, and analysis area.
Follow a workflow
Work through practical tutorials that may span more than one package, from raw genotype data to analysis-ready outputs.
Revisit a workshop
Find setup instructions, slides, exercises, example data, and recordings from Breeding Insight training events.
Featured software
Compare packages and applications, then go directly to installation instructions, documentation, source code, and related tutorials.
BIGr
Core genomic analysis functions for diploid and polyploid breeding programs.
BIGapp
A user-friendly Shiny application for genomic analysis without requiring command-line workflows.
Qploidy2
Ploidy, aneuploidy, and large-scale copy-number estimation from genotyping data.
Task-based learning
Tutorials follow complete tasks, from preparing raw data to interpreting results. When a workflow uses several packages, the steps stay together in one guide.