AlloMate

R Shiny
Mate allocation
Kinship
Breeding optimization
OCS
Genetic mate allocation and breeding optimization that balances gain and inbreeding.

AlloMate is a Shiny application for evaluating kinship, combining estimated breeding values, optimizing individual contributions, and producing mating plans under relatedness constraints.

R ShinyMate allocationOCS

Start here

remotes::install_github("Breeding-Insight/AlloMate")
AlloMate::run_app()

Source code Releases

Good fit for

  • Pedigree-based kinship analysis
  • Multi-trait selection with weighted breeding values
  • Optimum Contribution Selection and constrained mating plans
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