Genomic Analysis
BIGapp v1.8.0
R Shiny app
Breedverse
A user-friendly Shiny application for genomic analysis without command-line tools.
Software
Open-source packages and applications developed and supported by Breeding Insight.
Software
Open-source packages and applications developed and supported by Breeding Insight.
Breeding Insight develops software across genomics, breeding data management, phenotyping, and decision support. Use the filters to narrow the catalog by task or technology.
Genomic Analysis
3
Data Management
1
Data Management
DeltaBreed v1.5.0
Web app
Runs online
Open-source breeding data management software for specialty crop and animal breeders.
Pedigree & Mating
3
Pedigree & Mating
AlloMate v2.1.0
R Shiny app
Breedverse
Runs online
Genetic mate allocation and breeding optimization that balances gain and inbreeding.
Pedigree & Mating
BIGpopA v2.2.0
R package
Breedverse
Pedigree quality control, parentage assignment, and breed or line composition estimation.
Pedigree & Mating
Familia v2.0.0
R Shiny app
Breedverse
Pedigree validation, parentage assignment, and ancestry assessment for plant and animal populations.
In development
2
Markers & Haplotypes
HapApp v0.2.0
In development
Web app
Runs online
Processes DArTag MADC reports against Breeding Insight's public microhaplotype databases and assigns fixed allele IDs ready for downstream analysis.
Markers & Haplotypes
HapSearch v0.3.0
In development
Web app
Runs online
A web-based microhaplotype analysis platform for searching, visualizing, and sharing haplotype data across breeding projects and species.
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