Breeding Insight Software https://breeding-insight.github.io/SoftwareHub/news.html Release notes for Breeding Insight software. quarto-1.10.18 Thu, 13 Aug 2026 00:00:00 GMT Familia 1.0.4 https://breeding-insight.github.io/SoftwareHub/news/familia-1.0.4.html
  • Updated the funding attribution banner on the Home tab to read “University of Florida” instead of “Cornell University”, reflecting the correct institution.
  • Added URL and BugReports fields to DESCRIPTION.

    • Release on GitHub · About Familia

    Back to top ]]>     Familia https://breeding-insight.github.io/SoftwareHub/news/familia-1.0.4.html Thu, 13 Aug 2026 00:00:00 GMT     BIGapp 1.8.0 https://breeding-insight.github.io/SoftwareHub/news/bigapp-1.8.0.html

    What’s Changed

    • updated minor edits by @alex-sandercock in https://github.com/Breeding-Insight/BIGapp/pull/150
    • include main updates by @alex-sandercock in https://github.com/Breeding-Insight/BIGapp/pull/152
    • madc2vcf updates by @Cristianetaniguti in https://github.com/Breeding-Insight/BIGapp/pull/154
    • Merge GS-Amat support to development by @alex-sandercock in https://github.com/Breeding-Insight/BIGapp/pull/153
    • Implement UI and madc2vcf updates with GS-Amat support by @alex-sandercock in https://github.com/Breeding-Insight/BIGapp/pull/155

    Full Changelog: https://github.com/Breeding-Insight/BIGapp/compare/v1.6.0…v1.8.0

    Release on GitHub · About BIGapp

    Back to top ]]>     BIGapp https://breeding-insight.github.io/SoftwareHub/news/bigapp-1.8.0.html Tue, 04 Aug 2026 00:00:00 GMT     BIGpopA 1.0.6 https://breeding-insight.github.io/SoftwareHub/news/bigpopa-1.0.6.html
  • Added a “BIGpopA Tutorial” vignette demonstrating the pedigree cleaning, validation, parentage assignment, and breed/line composition workflow

    • Release on GitHub · About BIGpopA

    Back to top ]]>     BIGpopA https://breeding-insight.github.io/SoftwareHub/news/bigpopa-1.0.6.html Thu, 16 Jul 2026 00:00:00 GMT     BIGpopA 1.0.5 https://breeding-insight.github.io/SoftwareHub/news/bigpopa-1.0.5.html
  • Updated package title and example on function descriptions to pass CRAN review

    • Release on GitHub · About BIGpopA

    Back to top ]]>     BIGpopA https://breeding-insight.github.io/SoftwareHub/news/bigpopa-1.0.5.html Thu, 16 Jul 2026 00:00:00 GMT     Familia 1.0.2 https://breeding-insight.github.io/SoftwareHub/news/familia-1.0.2.html *Fixed test directory for CRAN submission

    Release on GitHub · About Familia

    Back to top ]]>     Familia https://breeding-insight.github.io/SoftwareHub/news/familia-1.0.2.html Thu, 09 Jul 2026 00:00:00 GMT     BIGpopA 1.0.4 https://breeding-insight.github.io/SoftwareHub/news/bigpopa-1.0.4.html
  • Removed LICENSE file to pass CRAN automated tests

    • Release on GitHub · About BIGpopA

    Back to top ]]>     BIGpopA https://breeding-insight.github.io/SoftwareHub/news/bigpopa-1.0.4.html Thu, 11 Jun 2026 00:00:00 GMT     BIGpopA 1.0.1 https://breeding-insight.github.io/SoftwareHub/news/bigpopa-1.0.1.html No release notes were provided.

    Release on GitHub · About BIGpopA

    Back to top ]]>     BIGpopA https://breeding-insight.github.io/SoftwareHub/news/bigpopa-1.0.1.html Mon, 08 Jun 2026 00:00:00 GMT     BIGpopA 0.1.0 https://breeding-insight.github.io/SoftwareHub/news/bigpopa-0.1.0.html No release notes were provided.

    Release on GitHub · About BIGpopA

    Back to top ]]>     BIGpopA https://breeding-insight.github.io/SoftwareHub/news/bigpopa-0.1.0.html Fri, 05 Jun 2026 00:00:00 GMT     AlloMate 2.1.0 https://breeding-insight.github.io/SoftwareHub/news/allomate-2.1.0.html No release notes were provided.

    Release on GitHub · About AlloMate

    Back to top ]]>     AlloMate https://breeding-insight.github.io/SoftwareHub/news/allomate-2.1.0.html Wed, 03 Jun 2026 00:00:00 GMT     AlloMate 2.0.0 https://breeding-insight.github.io/SoftwareHub/news/allomate-2.0.0.html No release notes were provided.

    Release on GitHub · About AlloMate

    Back to top ]]>     AlloMate https://breeding-insight.github.io/SoftwareHub/news/allomate-2.0.0.html Wed, 03 Jun 2026 00:00:00 GMT     Familia 1.0.0 https://breeding-insight.github.io/SoftwareHub/news/familia-1.0.0.html

    What’s Changed

    • Josue adds by @josuechinchilla in https://github.com/Breeding-Insight/familia/pull/3
    • Add ped cleaner by @josuechinchilla in https://github.com/Breeding-Insight/familia/pull/5
    • Add parentage functions+breedverse panel by @josuechinchilla in https://github.com/Breeding-Insight/familia/pull/6
    • Development by @josuechinchilla in https://github.com/Breeding-Insight/familia/pull/7

    New Contributors

    • @josuechinchilla made their first contribution in https://github.com/Breeding-Insight/familia/pull/3

    Full Changelog: https://github.com/Breeding-Insight/familia/compare/v0.1.0…v1.0.0

    Release on GitHub · About Familia

    Back to top ]]>     Familia https://breeding-insight.github.io/SoftwareHub/news/familia-1.0.0.html Tue, 02 Jun 2026 00:00:00 GMT     BIGr 0.7.2 https://breeding-insight.github.io/SoftwareHub/news/bigr-0.7.2.html
  • Fixed manual text errors

    • Release on GitHub · About BIGr

    Back to top ]]>     BIGr https://breeding-insight.github.io/SoftwareHub/news/bigr-0.7.2.html Mon, 18 May 2026 00:00:00 GMT     BIGapp 1.6.0 https://breeding-insight.github.io/SoftwareHub/news/bigapp-1.6.0.html Improved user warnings and addressed minor bug fixes

    Release on GitHub · About BIGapp

    Back to top ]]>     BIGapp https://breeding-insight.github.io/SoftwareHub/news/bigapp-1.6.0.html Fri, 13 Mar 2026 00:00:00 GMT     BIGapp 1.5.1 https://breeding-insight.github.io/SoftwareHub/news/bigapp-1.5.1.html This release includes bug fixes and new feature updates: - Genotype files are now validated for proper formatting when uploaded - The correct Ref and Alt bases are retained in the VCF through the genotype processing steps - The list of removed samples is provided in the VCF Filtering tab

    Release on GitHub · About BIGapp

    Back to top ]]>     BIGapp https://breeding-insight.github.io/SoftwareHub/news/bigapp-1.5.1.html Tue, 23 Sep 2025 00:00:00 GMT     BIGr 0.6.2 https://breeding-insight.github.io/SoftwareHub/news/bigr-0.6.2.html
  • Fixed the doi and name list in the CITATION file

    • Release on GitHub · About BIGr

    Back to top ]]>     BIGr https://breeding-insight.github.io/SoftwareHub/news/bigr-0.6.2.html Thu, 18 Sep 2025 00:00:00 GMT     BIGapp 1.3.0 https://breeding-insight.github.io/SoftwareHub/news/bigapp-1.3.0.html Introduced several feature updates and bug fixes for BIGapp including documentation improvements, enhanced data processing and visualization options, and updated UI text.

    • Updated help file documentation with clearer examples and formatting.
    • Enhanced data conversion in dosage2vcf with revised input validations and updated function calls, and improved PCA plotting with added shape options and dynamic aesthetics.
    • Minor UI and version updates in home, GSAcc modules, and the application descriptor.

    Release on GitHub · About BIGapp

    Back to top ]]>     BIGapp https://breeding-insight.github.io/SoftwareHub/news/bigapp-1.3.0.html Wed, 04 Jun 2025 00:00:00 GMT     BIGr 0.5.5 https://breeding-insight.github.io/SoftwareHub/news/bigr-0.5.5.html
  • Updated DESCRIPTION
  • Added return value for merge_MADCs
  • Added optional seed for check_ped
  • Added verbose option

    • Release on GitHub · About BIGr

    Back to top ]]>     BIGr https://breeding-insight.github.io/SoftwareHub/news/bigr-0.5.5.html Mon, 19 May 2025 00:00:00 GMT     BIGapp 1.2.0 https://breeding-insight.github.io/SoftwareHub/news/bigapp-1.2.0.html Feature updates and bug fixes: - When a trait file is uploaded the user is prompted to select the missing data variable, and select the column containing the sample IDs - Updated the VCF Filtering tab to allow sample subsetting in the Advanced Options - Added option to subset samples for the PolyRAD dosage calling method - Added support for genotype matrix to VCF conversion - Fixed a UI bug when extracting target SNPs from MADC file - Added new user warnings to PCA tab

    Release on GitHub · About BIGapp

    Back to top ]]>     BIGapp https://breeding-insight.github.io/SoftwareHub/news/bigapp-1.2.0.html Thu, 27 Mar 2025 00:00:00 GMT     BIGr 0.4.2 https://breeding-insight.github.io/SoftwareHub/news/bigr-0.4.2.html
  • Minor update to the check_ped() function

    • Release on GitHub · About BIGr

    Back to top ]]>     BIGr https://breeding-insight.github.io/SoftwareHub/news/bigr-0.4.2.html Tue, 18 Mar 2025 00:00:00 GMT     BIGr 0.4.1 https://breeding-insight.github.io/SoftwareHub/news/bigr-0.4.1.html Minor bug fixes

    Release on GitHub · About BIGr

    Back to top ]]>     BIGr https://breeding-insight.github.io/SoftwareHub/news/bigr-0.4.1.html Fri, 07 Mar 2025 00:00:00 GMT